Publications
RNA-binding protein HuR regulates expression of ABCA1
Cristina M Ramirez, Chin-Sheng Lin, Kotb Abdelmohsen, Leigh Goedeke,
Je-Hyun Yoon, Julio Madrigal-Matute, Jose L Martin-Ventura, Dat T Vo,
Philip J Uren , Luiz O Penalva, Myriam Gorospe,
Carlos Fernandez-Hernando
2014 Journal of Lipid Research
[PDF][Publisher site]
Genomic Analyses Reveal Broad Impact of miR-137 on Genes Associated
with Malignant Transformation and Neuronal Differentiation in
Glioblastoma Cells
Saleh Tamim, Dat T Vo, Philip J Uren* , Mei Qiao,
Eckart Bindewald, Wojciech K Kasprzak, Bruce A Shapiro,
Helder I Nakaya, Suzanne C Burns, Patricia R Araujo,
Ichiro Nakano, Agnes J Radek, Scott Kuersten, Andrew D Smith,
Luiz OF Penalva
2014 PloS one
[PDF][Publisher site]
WTAP is a Novel Oncogenic Protein in Acute Myeloid Leukemia
H Bansal, Q Yihua, SP Iyer, S Ganapathy, D Proia, LO Penalva,
PJ Uren , U Suresh, JS Carew, AB Karnad,
S Weitman, GE Tomlinson, MK Rao, SM Kornblau, S Bansal
2014 Leukemia
[PDF][Publisher site]
Molecular hierarchy of mammary differentiation yields refined markers
of mammary stem cells
Camila O dos Santos, Clare Rebbeck, Elena Rozhkova, Amy Valentine,
Abigail Samuels, Lolahon R Kadiri, Pavel Osten, Elena Y Harris,
Philip J Uren, Andrew D Smith, Gregory J Hannon
2013 Proceedings of the National Academy of Sciences 110 (18)
[PDF][Publisher site]
Site identification in high-throughput RNA-protein interaction
data
Philip J Uren* , Emad Bahrami-Samani,
Suzanne C Burns, Mei Qiao, Fedor V Karginov, Emily Hodges,
Gregory J Hannon, Jeremy R Sanford, Luiz OF Penalva,
Andrew D Smith
2012 Bioinformatics 28 (23)
[PDF][Publisher site]
The RNA-binding protein Musashi1 affects medulloblastoma growth via
a network of cancer-related genes and is an indicator of poor
prognosis
Dat T Vo, Dharmalingam Subramaniam, Marc Remke, Tarea L Burton,
Philip J Uren, Jonathan A Gelfond,
Raquel de Sousa Abreu, Suzanne C Burns, Mei Qiao, Uthra Suresh,
Andrey Korshunov, Adrian M Dubuc, Paul A Northcott, Andrew D Smith,
Stefan M Pfister, Michael D Taylor, Sarath C Janga, Shrikant Anant,
Christine Vogel, Luiz OF Penalva
2012 The American journal of pathology 181 (5) 1762-1772
[PDF][Publisher site]
Genomic analyses of the RNA-binding protein Hu antigen R (HuR)
identify a complex network of target genes and novel characteristics
of its binding sites
Philip J Uren*, Suzanne C Burns, Jianhua Ruan,
Kusum K Singh, Andrew D Smith, Luiz OF Penalva
2011 Journal of Biological Chemistry 286 (43) 37063-37066
[PDF][Publisher site]
Directional DNA methylation changes and complex intermediate
states accompany lineage specificity in the adult hematopoietic
compartment
Emily Hodges, Antoine Molaro, Camila O Dos Santos, Pramod Thekkat,
Qiang Song, Philip J Uren, Jin Park, Jason Butler,
Shahin Rafii, W Richard McCombie, Andrew D Smith,
Gregory J Hannon
2011 Molecular cell 44 (1) 17-28
[PDF][Publisher site]
Improving promoter prediction using multiple instance learning
Philip J Uren*, R Mike Cameron-Jones,
Arthur HJ Sale
2008 AI 2008: Advances in Artificial Intelligence 289-299
[PDF][Publisher site]
MAUSA: using simulated annealing for guide tree construction in
multiple sequence alignment
Philip J Uren*, R Mike Cameron-Jones,
Arthur HJ Sale
2007 AI 2007: Advances in Artificial Intelligence 599-608
[PDF][Publisher site]
Promoter prediction using physico-chemical properties of DNA
Philip Uren*, R Michael Cameron-Jones, Arthur Sale
2006 Computational Life Sciences II 21-31
[PDF][Publisher site]
* indicates first or co-first authorship
I have acted as a reviewer for the follwoing journals, conferences, and meetings:
- Nucleic Acids Research
- Bioinformatics
- Genome Biology
- PLoS One
- Journal of Computer Science and Technology
- RECOMB 2014
- the 2006 Joint Australian Conference on Artificial Intelligence which was held in Hobart and hosted by the University of Tasmania.
All work on this page by
Philip Uren is licensed under a
Creative Commons Attribution-Non-Commercial-Share Alike 3.0 United States License.
www.philipuren.com.
Site last updated 17th May 2014